Input-Output io

io.from_sgkit_dataset(sgkit_dataset, *[, ...])	Convert an sgkit xarray.Dataset to AnnData.
io.read_plink([path, var_rename, ...])	Read Plink Format
io.read_bgen([path, var_rename, obs_rename, ...])	Read bgen Format
io.read_sgkit_zarr(path, *[, var_rename, ...])	Read SgKit Zarr Format
io.read_pgen_zarr(store)	Lazily read an AnnData Zarr v3 store written by stream_pgen_to_zarr.
io.stream_pgen_to_zarr(pgen_path, output_path, *)	Stream one or more PGEN files → a single Zarr v3 AnnData-compatible store.
io.to_plink(gdata[, output_prefix, ...])	Export genotype data from an AnnData object to PLINK1 binary format (.bed, .bim, .fam).
io.write_variants_to_vcf(gdata[, out_file])	Write unique variants from gdata to vcf file for annotation