Resources

resources.get_1000genomes([config_path, ...])	Download and preprocess the 1000 Genomes Project genotype data.
resources.get_1000genomes_grch38([...])	Download and preprocess the GRcH38 1000 Genomes Project genotype data (https://www.cell.com/cell/pdf/S0092-8674(22)00991-6.pdf).
resources.get_dummy_onek1k([config_path, ...])	Download and load the dummy OneK1K dataset.
resources.get_onek1k([config_path, ...])	Download and preprocess the OneK1K genotype and expression dataset.
resources.get_eqtl_catalog_dataset_associations(...)	Retrieve associations for a specific eQTL catalog dataset and cache locally.
resources.get_eqtl_catalog_datasets([...])	Retrieve eQTL catalog datasets and cache locally.
resources.get_gwas_catalog_studies([...])
resources.get_gwas_catalog_study(...)	Fetch details of a single GWAS study.
resources.get_gwas_catalog_study_summary_stats(...)	Download full summary statistics for a GWAS study.
resources.liftover_gwas_summary_stats(df, ...)	Translate SNP positions in a GWAS summary-statistics DataFrame between genome builds.
resources.get_pgs_catalog_score(pgs_id, **params)	Fetch details for a single PGS score.
resources.get_pgs_catalog_scores([...])	Retrieve PGS catalog scores and cache locally.
resources.get_1000genomes_ld_scores([...])	Download, extract, and load precomputed 1000 Genomes linkage disequilibrium (LD) scores.
resources.get_1000genomes_ld_weights([...])	Download, extract, and load precomputed 1000 Genomes LD weights.
resources.get_1000genomes_plink_files([...])	Download and extract 1000 Genomes PLINK files (BED/BIM/FAM format).
resources.get_1000genomes_frq([config_path, ...])	Download and extract 1000 Genomes allele frequency files.
resources.get_1000genomes_hapmap3([...])	Download the HapMap3 SNP list (no MHC region).
resources.merge_1000g_plink_chromosomes(...)	Merge per-chromosome 1000G PLINK bfiles into a single genome-wide bfile.