Preprocessing pp

Preprocessing pp#

pp.variant_qc(adata, *[, maf_threshold, ...])

Perform quality control on variants.

pp.cell_level_obs_filter(dd[, ...])

Filter DonorData based on cell level observations information.

pp.donor_level_obs_filter(dd[, ...])

Filter DonorData based on donor level observations information.

pp.donor_level_var_filter(dd, *[, ...])

Filter DonorData based on cell level variables information.

pp.log_transform(adata, *[, base, inplace, copy])

Apply log transformation to protein abundance values.

pp.low_abundance_filter(adata, *[, ...])

Filter out low-abundance metabolites.

pp.missing_values_filter(adata, *[, ...])

This function removes features that have a proportion of missing values greater than the specified threshold.

pp.normalize(adata, *[, method, inplace, copy])

This function normalizes values using the specified method.