cellink.tl.external.read_tensorqtl_results

cellink.tl.external.read_tensorqtl_results(prefix=None, mode=None, cis_output=None, interaction_df=None)

Read TensorQTL result files.

Parameters:

• prefix (str, optional) – File prefix used for generating intermediate input/output files. Required for most modes.

• mode (str) – Mode of TensorQTL run (e.g., “cis_nominal”, “cis”, “trans”, “cis_susie”).

• cis_output (str or bool, default=True) –

  • If a string, specifies the path to the cis_output file for modes like cis_independent or cis_susie.

  • If True, the function will automatically attempt to find the cis_output file in file_paths.

  • If False, the cis_output will not be read.

• interaction_df (str or bool, default=True) –

  • If a string, specifies the path to the interaction terms file for cis_nominal mode.

  • If True, the function will attempt to automatically find the interaction file in file_paths.

  • If False, the interaction file will not be read.

Return type:

Union[DataFrame, Tuple[DataFrame, DataFrame, DataFrame], Tuple[dict, DataFrame]]

Returns:

pd.DataFrame or tuple Parsed results depending on the mode.