Plotting

Plotting#

pl.locus(locus_df[, gene_df, pval_col, ...])

Generate a locus plot with SNP p-values and optional gene annotations.

pl.manhattan(pvals_df[, pval_col, ...])

Generate a Manhattan plot for genome-wide association p-values.

pl.qq(pvals_df[, pval_col, group_col, ...])

Generate quantile-quantile (QQ) plots of p-values, optionally grouped by a categorical column.

pl.expression_by_genotype(dd[, snp, ...])

Plot gene expression by donor genotype across cell types or genes.

pl.volcano(df[, logfc_col, pval_col, ...])

Generate a volcano plot showing -log10(p-value) vs. log fold change.