cellink.pp.missing_values_filter

cellink.pp.missing_values_filter(adata, *, max_missing_ratio=0.2, inplace=True, copy=True)

This function removes features that have a proportion of missing values greater than the specified threshold.

Parameters:

• adata (AnnData) – The annotated data matrix of shape n_obs x n_vars.

• max_missing_ratio (float (default: 0.2)) – Maximum allowable proportion of missing values for a protein to be retained.

• inplace (bool (default: True)) – Whether to update adata or return a copy of the new AnnData object.

• copy (bool (default: True)) – Whether to modify copied input object. Not compatible with inplace=False.

Return type:

AnnData | None

Returns:

Returns the AnnData object with filtered values or updates the input adata if inplace is True.